IL_9BUP_011

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCCUU*AUUUA

Length

11 nucleotides

Bulged bases

9BUP|1|AA|U|251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|U|178
9BUP|1|AA|G|179
9BUP|1|AA|C|180
9BUP|1|AA|C|181
9BUP|1|AA|U|182
9BUP|1|AA|U|183
*
9BUP|1|AA|A|248
9BUP|1|AA|U|249
9BUP|1|AA|U|250
9BUP|1|AA|U|251
9BUP|1|AA|A|252

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein L35

Chain AL

60S ribosomal protein L13