IL_9BUP_015

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

9BUP|1|AA|A|346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_015 not in the Motif Atlas

Homologous match to IL_8P9A_242

Geometric discrepancy: 0.0871

The information below is about IL_8P9A_242

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9BUP|1|AA|G|345
9BUP|1|AA|A|346
9BUP|1|AA|C|347
*
9BUP|1|AC|G|29
9BUP|1|AC|U|30

Current chains

Chain AA

28S ribosomal RNA

Chain AC

5.8S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L4

Chain AZ

60S ribosomal protein L26