IL_9BUP_016

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAC*GCAAUUAAAUAGUAC

Length

19 nucleotides

Bulged bases

9BUP|1|AA|C|400, 9BUP|1|AA|U|408, 9BUP|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|G|385
9BUP|1|AA|U|386
9BUP|1|AA|A|387
9BUP|1|AA|C|388
*
9BUP|1|AA|G|399
9BUP|1|AA|C|400
9BUP|1|AA|A|401
9BUP|1|AA|A|402
9BUP|1|AA|U|403
9BUP|1|AA|U|404
9BUP|1|AA|A|405
9BUP|1|AA|A|406
9BUP|1|AA|A|407
9BUP|1|AA|U|408
9BUP|1|AA|A|409
9BUP|1|AA|G|410
9BUP|1|AA|U|411
9BUP|1|AA|A|412
9BUP|1|AA|C|413

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AW

60S ribosomal protein L17

Chain AZ

60S ribosomal protein L26