IL_9BUP_022

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUCA*UUCUUCAA

Length

13 nucleotides

Bulged bases

9BUP|1|AA|U|530, 9BUP|1|AA|U|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|U|529
9BUP|1|AA|U|530
9BUP|1|AA|U|531
9BUP|1|AA|C|532
9BUP|1|AA|A|533
*
9BUP|1|AA|U|619
9BUP|1|AA|U|620
9BUP|1|AA|C|621
9BUP|1|AA|U|622
9BUP|1|AA|U|623
9BUP|1|AA|C|624
9BUP|1|AA|A|625
9BUP|1|AA|A|626

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A5

60S ribosomal protein L7

Chain AF

60S ribosomal protein L4

Chain AN

60S ribosomal protein L14

Chain AU

60S ribosomal protein L18a