IL_9BUP_023

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCU*AA

Length

5 nucleotides

Bulged bases

9BUP|1|AA|C|585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_023 not in the Motif Atlas

Geometric match to IL_5F5H_001

Geometric discrepancy: 0.2873

The information below is about IL_5F5H_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

9BUP|1|AA|U|584
9BUP|1|AA|C|585
9BUP|1|AA|U|586
*
9BUP|1|AA|A|605
9BUP|1|AA|A|606

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AN

60S ribosomal protein L14

Chain AU

60S ribosomal protein L18a