IL_9BUP_027

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAUUUG*CUUUGCAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|A|827
9BUP|1|AA|G|828
9BUP|1|AA|A|829
9BUP|1|AA|U|830
9BUP|1|AA|U|831
9BUP|1|AA|U|832
9BUP|1|AA|G|833
*
9BUP|1|AA|C|861
9BUP|1|AA|U|862
9BUP|1|AA|U|863
9BUP|1|AA|U|864
9BUP|1|AA|G|865
9BUP|1|AA|C|866
9BUP|1|AA|A|867
9BUP|1|AA|U|868

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein L29

Chain AS

60S ribosomal protein L18-2