IL_9BUP_029

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

9BUP|1|AA|U|893

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_029 not in the Motif Atlas

Geometric match to IL_4WF9_088

Geometric discrepancy: 0.2889

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9BUP|1|AA|A|880
9BUP|1|AA|A|881
*
9BUP|1|AA|U|892
9BUP|1|AA|U|893
9BUP|1|AA|U|894

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein L29

Chain AO

60S ribosomal protein L27a

Chain Ai

Large ribosomal subunit protein eL42