IL_9BUP_032

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

9BUP|1|AA|A|1015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_032 not in the Motif Atlas

Homologous match to IL_8CRE_031

Geometric discrepancy: 0.1067

The information below is about IL_8CRE_031

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9BUP|1|AA|U|947
9BUP|1|AA|G|948
*
9BUP|1|AA|C|1014
9BUP|1|AA|A|1015
9BUP|1|AA|A|1016

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2

Chain Aa

60S ribosomal protein L34

Chain Ah

Large ribosomal subunit protein eL43