IL_9BUP_033

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

9BUP|1|AA|G|979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_033 not in the Motif Atlas

Homologous match to IL_8CRE_032

Geometric discrepancy: 0.0817

The information below is about IL_8CRE_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

9BUP|1|AA|U|952
9BUP|1|AA|U|953
*
9BUP|1|AA|G|978
9BUP|1|AA|G|979
9BUP|1|AA|A|980

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2

Chain AT

60S ribosomal protein L19

Chain Ah

Large ribosomal subunit protein eL43