IL_9BUP_036

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

9BUP|1|AA|U|993

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_036 not in the Motif Atlas

Homologous match to IL_8CRE_035

Geometric discrepancy: 0.0594

The information below is about IL_8CRE_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9BUP|1|AA|C|992
9BUP|1|AA|U|993
9BUP|1|AA|G|994
*
9BUP|1|AA|C|1005
9BUP|1|AA|G|1006

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain Ac

Ribosomal protein L37