3D structure

PDB id
9BUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GGG*UAAUC
Length
8 nucleotides
Bulged bases
9BUP|1|AA|G|1027, 9BUP|1|AA|A|1039, 9BUP|1|AA|A|1040, 9BUP|1|AA|U|1041
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9BUP_037 not in the Motif Atlas
Homologous match to IL_8CRE_036
Geometric discrepancy: 0.0774
The information below is about IL_8CRE_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06549.2
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

9BUP|1|AA|G|1026
9BUP|1|AA|G|1027
9BUP|1|AA|G|1028
*
9BUP|1|AA|U|1038
9BUP|1|AA|A|1039
9BUP|1|AA|A|1040
9BUP|1|AA|U|1041
9BUP|1|AA|C|1042

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AD
60S ribosomal protein L2
Chain AP
Ribosomal protein L15
Chain AW
60S ribosomal protein L17
Chain Ac
Ribosomal protein L37

Coloring options:


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