IL_9BUP_039
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAUUAAUAU*AAAAUA
- Length
- 16 nucleotides
- Bulged bases
- 9BUP|1|AA|U|1099, 9BUP|1|AA|A|1100, 9BUP|1|AA|A|1229, 9BUP|1|AA|U|1232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BUP|1|AA|U|1095
9BUP|1|AA|G|1096
9BUP|1|AA|A|1097
9BUP|1|AA|U|1098
9BUP|1|AA|U|1099
9BUP|1|AA|A|1100
9BUP|1|AA|A|1101
9BUP|1|AA|U|1102
9BUP|1|AA|A|1103
9BUP|1|AA|U|1104
*
9BUP|1|AA|A|1228
9BUP|1|AA|A|1229
9BUP|1|AA|A|1230
9BUP|1|AA|A|1231
9BUP|1|AA|U|1232
9BUP|1|AA|A|1233
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 60S ribosomal protein L29
- Chain A5
- 60S ribosomal protein L7
- Chain AS
- 60S ribosomal protein L18-2
- Chain AV
- 60S ribosomal protein L21
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