IL_9BUP_040

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAU*AU

Length

5 nucleotides

Bulged bases

9BUP|1|AA|A|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_040 not in the Motif Atlas

Homologous match to IL_8P9A_265

Geometric discrepancy: 0.1116

The information below is about IL_8P9A_265

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

9BUP|1|AA|A|1105
9BUP|1|AA|A|1106
9BUP|1|AA|U|1107
*
9BUP|1|AA|A|1226
9BUP|1|AA|U|1227

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein L29

Chain A5

60S ribosomal protein L7

Chain AS

60S ribosomal protein L18-2

Chain AV

60S ribosomal protein L21