IL_9BUP_041
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAGGUAG*CCAAUAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_041 not in the Motif Atlas
- Homologous match to IL_8P9A_266
- Geometric discrepancy: 0.0995
- The information below is about IL_8P9A_266
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|AA|C|1113
9BUP|1|AA|A|1114
9BUP|1|AA|G|1115
9BUP|1|AA|G|1116
9BUP|1|AA|U|1117
9BUP|1|AA|A|1118
9BUP|1|AA|G|1119
*
9BUP|1|AA|C|1175
9BUP|1|AA|C|1176
9BUP|1|AA|A|1177
9BUP|1|AA|A|1178
9BUP|1|AA|U|1179
9BUP|1|AA|A|1180
9BUP|1|AA|G|1181
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 60S ribosomal protein L29
- Chain A5
- 60S ribosomal protein L7
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AQ
- 60S ribosomal protein L10
- Chain AR
- 60S ribosomal protein L5
- Chain AU
- 60S ribosomal protein L18a
- Chain AV
- 60S ribosomal protein L21
Coloring options: