IL_9BUP_042

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_042 not in the Motif Atlas

Homologous match to IL_8CRE_042

Geometric discrepancy: 0.1641

The information below is about IL_8CRE_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

9BUP|1|AA|G|1119
9BUP|1|AA|A|1120
*
9BUP|1|AA|U|1173
9BUP|1|AA|C|1174
9BUP|1|AA|C|1175

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AQ

60S ribosomal protein L10

Chain AR

60S ribosomal protein L5

Chain AV

60S ribosomal protein L21