IL_9BUP_051
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGCCUAAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_051 not in the Motif Atlas
- Homologous match to IL_8CRE_052
- Geometric discrepancy: 0.1348
- The information below is about IL_8CRE_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
9BUP|1|AA|U|1301
9BUP|1|AA|G|1302
9BUP|1|AA|C|1303
9BUP|1|AA|C|1304
9BUP|1|AA|U|1305
9BUP|1|AA|A|1306
9BUP|1|AA|A|1307
9BUP|1|AA|A|1308
*
9BUP|1|AA|U|1453
9BUP|1|AA|A|1454
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein L7
- Chain A9
- 60S ribosomal protein L35ae
- Chain AK
- 60S ribosomal protein L13
- Chain AU
- 60S ribosomal protein L18a
Coloring options: