IL_9BUP_059

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

9BUP|1|AA|U|1549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_059 not in the Motif Atlas

Geometric match to IL_8P9A_314

Geometric discrepancy: 0.2298

The information below is about IL_8P9A_314

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9BUP|1|AA|A|1548
9BUP|1|AA|U|1549
9BUP|1|AA|A|1550
*
9BUP|1|AA|U|1557
9BUP|1|AA|U|1558

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A2

60S ribosomal protein L28

Chain A8

60S ribosomal protein L32