IL_9BUP_072
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGGAAUC*GGAGAAG
- Length
- 14 nucleotides
- Bulged bases
- 9BUP|1|AA|U|1873, 9BUP|1|AA|A|1886
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_072 not in the Motif Atlas
- Homologous match to IL_8CRE_078
- Geometric discrepancy: 0.1555
- The information below is about IL_8CRE_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69543.3
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BUP|1|AA|U|1868
9BUP|1|AA|G|1869
9BUP|1|AA|G|1870
9BUP|1|AA|A|1871
9BUP|1|AA|A|1872
9BUP|1|AA|U|1873
9BUP|1|AA|C|1874
*
9BUP|1|AA|G|1884
9BUP|1|AA|G|1885
9BUP|1|AA|A|1886
9BUP|1|AA|G|1887
9BUP|1|AA|A|1888
9BUP|1|AA|A|1889
9BUP|1|AA|G|1890
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A1
- 60S ribosomal protein L27
- Chain A6
- 60S ribosomal protein L30e
- Chain AT
- 60S ribosomal protein L19
- Chain Aa
- 60S ribosomal protein L34
- Chain Ah
- Large ribosomal subunit protein eL43
- Chain SU
- 40S ribosomal protein S15
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