IL_9BUP_079

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_079 not in the Motif Atlas

Geometric match to IL_8P9A_305

Geometric discrepancy: 0.058

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

9BUP|1|AA|G|2166
9BUP|1|AA|G|2167
9BUP|1|AA|A|2168
9BUP|1|AA|A|2169
9BUP|1|AA|G|2170
9BUP|1|AA|U|2171
9BUP|1|AA|C|2172
9BUP|1|AA|G|2173
9BUP|1|AA|G|2174
*
9BUP|1|AA|C|2626
9BUP|1|AA|U|2627
9BUP|1|AA|G|2628
9BUP|1|AA|U|2629
9BUP|1|AA|C|2630

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AM

60S ribosomal protein L23