3D structure

PDB id
9BUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CGUAAC*GGAAAAG
Length
13 nucleotides
Bulged bases
9BUP|1|AA|A|2199
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9BUP_081 not in the Motif Atlas
Homologous match to IL_8CRE_084
Geometric discrepancy: 0.0819
The information below is about IL_8CRE_084
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

9BUP|1|AA|C|2186
9BUP|1|AA|G|2187
9BUP|1|AA|U|2188
9BUP|1|AA|A|2189
9BUP|1|AA|A|2190
9BUP|1|AA|C|2191
*
9BUP|1|AA|G|2196
9BUP|1|AA|G|2197
9BUP|1|AA|A|2198
9BUP|1|AA|A|2199
9BUP|1|AA|A|2200
9BUP|1|AA|A|2201
9BUP|1|AA|G|2202

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AT
60S ribosomal protein L19
Chain Ag
60S ribosomal protein L41
Chain Ah
Large ribosomal subunit protein eL43
Chain SA
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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