IL_9BUP_088

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUGAAUG*CGCA

Length

11 nucleotides

Bulged bases

9BUP|1|AA|A|2500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|U|2497
9BUP|1|AA|U|2498
9BUP|1|AA|G|2499
9BUP|1|AA|A|2500
9BUP|1|AA|A|2501
9BUP|1|AA|U|2502
9BUP|1|AA|G|2503
*
9BUP|1|AA|C|2528
9BUP|1|AA|G|2529
9BUP|1|AA|C|2530
9BUP|1|AA|A|2531

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2

Chain S7

Transfer RNA; tRNA

Chain SA

Small subunit ribosomal RNA; SSU rRNA