IL_9BUP_089

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCAACU*AUCAAG

Length

12 nucleotides

Bulged bases

9BUP|1|AA|C|2524

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|U|2504
9BUP|1|AA|C|2505
9BUP|1|AA|A|2506
9BUP|1|AA|A|2507
9BUP|1|AA|C|2508
9BUP|1|AA|U|2509
*
9BUP|1|AA|A|2522
9BUP|1|AA|U|2523
9BUP|1|AA|C|2524
9BUP|1|AA|A|2525
9BUP|1|AA|A|2526
9BUP|1|AA|G|2527

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2

Chain Ab

60S ribosomal protein L36

Chain S7

Transfer RNA; tRNA