IL_9BUP_091

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9BUP|1|AA|A|2574, 9BUP|1|AA|C|2580, 9BUP|1|AA|C|2599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_091 not in the Motif Atlas

Homologous match to IL_8CRE_095

Geometric discrepancy: 0.1452

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

9BUP|1|AA|C|2570
9BUP|1|AA|C|2571
9BUP|1|AA|A|2572
9BUP|1|AA|A|2573
9BUP|1|AA|A|2574
9BUP|1|AA|U|2575
9BUP|1|AA|G|2576
9BUP|1|AA|C|2577
9BUP|1|AA|C|2578
9BUP|1|AA|U|2579
9BUP|1|AA|C|2580
9BUP|1|AA|G|2581
*
9BUP|1|AA|C|2597
9BUP|1|AA|G|2598
9BUP|1|AA|C|2599
9BUP|1|AA|G|2600

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ag

60S ribosomal protein L41

Chain S9

Transfer RNA; tRNA

Chain SA

Small subunit ribosomal RNA; SSU rRNA