IL_9BUP_093

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

9BUP|1|AA|A|2690, 9BUP|1|AA|C|3342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_093 not in the Motif Atlas

Homologous match to IL_8CRE_097

Geometric discrepancy: 0.0585

The information below is about IL_8CRE_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

9BUP|1|AA|G|2689
9BUP|1|AA|A|2690
9BUP|1|AA|A|2691
*
9BUP|1|AA|U|3340
9BUP|1|AA|A|3341
9BUP|1|AA|C|3342
9BUP|1|AA|C|3343

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AW

60S ribosomal protein L17