IL_9BUP_096
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAG*UGGG
- Length
- 7 nucleotides
- Bulged bases
- 9BUP|1|AA|G|2945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_096 not in the Motif Atlas
- Homologous match to IL_8CRE_100
- Geometric discrepancy: 0.1009
- The information below is about IL_8CRE_100
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85599.2
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
9BUP|1|AA|U|2716
9BUP|1|AA|A|2717
9BUP|1|AA|G|2718
*
9BUP|1|AA|U|2943
9BUP|1|AA|G|2944
9BUP|1|AA|G|2945
9BUP|1|AA|G|2946
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L2
- Chain AP
- Ribosomal protein L15
- Chain Ai
- Large ribosomal subunit protein eL42
- Chain S7
- Transfer RNA; tRNA
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