IL_9BUP_102

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAAAUGACG*CUACUGUG

Length

18 nucleotides

Bulged bases

9BUP|1|AA|A|3116, 9BUP|1|AA|C|3123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|C|3115
9BUP|1|AA|A|3116
9BUP|1|AA|A|3117
9BUP|1|AA|A|3118
9BUP|1|AA|A|3119
9BUP|1|AA|U|3120
9BUP|1|AA|G|3121
9BUP|1|AA|A|3122
9BUP|1|AA|C|3123
9BUP|1|AA|G|3124
*
9BUP|1|AA|C|3136
9BUP|1|AA|U|3137
9BUP|1|AA|A|3138
9BUP|1|AA|C|3139
9BUP|1|AA|U|3140
9BUP|1|AA|G|3141
9BUP|1|AA|U|3142
9BUP|1|AA|G|3143

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L13

Chain AO

60S ribosomal protein L27a

Chain Ab

60S ribosomal protein L36

Chain Ai

Large ribosomal subunit protein eL42