IL_9BUP_106

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9BUP|1|AA|U|3219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_106 not in the Motif Atlas

Homologous match to IL_8CRE_113

Geometric discrepancy: 0.2606

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

9BUP|1|AA|G|3187
9BUP|1|AA|U|3188
9BUP|1|AA|G|3189
*
9BUP|1|AA|U|3217
9BUP|1|AA|U|3218
9BUP|1|AA|U|3219
9BUP|1|AA|U|3220
9BUP|1|AA|U|3221

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AQ

60S ribosomal protein L10

Chain S9

Transfer RNA; tRNA