IL_9BUP_107

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_107 not in the Motif Atlas

Homologous match to IL_8CRE_114

Geometric discrepancy: 0.1186

The information below is about IL_8CRE_114

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9BUP|1|AA|C|3194
9BUP|1|AA|C|3195
9BUP|1|AA|A|3196
9BUP|1|AA|A|3197
9BUP|1|AA|G|3198
*
9BUP|1|AA|C|3208
9BUP|1|AA|G|3209
9BUP|1|AA|A|3210
9BUP|1|AA|C|3211
9BUP|1|AA|G|3212

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AQ

60S ribosomal protein L10

Chain Af

Ubiquitin-60S ribosomal protein L40

Chain S9

Transfer RNA; tRNA