3D structure

PDB id
9BUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CU*AACG
Length
6 nucleotides
Bulged bases
9BUP|1|AA|A|3300, 9BUP|1|AA|C|3301
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9BUP_110 not in the Motif Atlas
Homologous match to IL_8CRE_117
Geometric discrepancy: 0.1033
The information below is about IL_8CRE_117
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

9BUP|1|AA|C|3240
9BUP|1|AA|U|3241
*
9BUP|1|AA|A|3299
9BUP|1|AA|A|3300
9BUP|1|AA|C|3301
9BUP|1|AA|G|3302

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AE
60S ribosomal protein L3
Chain AK
60S ribosomal protein L13
Chain AM
60S ribosomal protein L23
Chain S9
Transfer RNA; tRNA

Coloring options:


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