IL_9BUP_121

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUAAU*AGAAAC

Length

12 nucleotides

Bulged bases

9BUP|1|AA|A|3515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_121 not in the Motif Atlas

Geometric match to IL_9DFE_106

Geometric discrepancy: 0.1512

The information below is about IL_9DFE_106

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9BUP|1|AA|G|3486
9BUP|1|AA|A|3487
9BUP|1|AA|U|3488
9BUP|1|AA|A|3489
9BUP|1|AA|A|3490
9BUP|1|AA|U|3491
*
9BUP|1|AA|A|3512
9BUP|1|AA|G|3513
9BUP|1|AA|A|3514
9BUP|1|AA|A|3515
9BUP|1|AA|A|3516
9BUP|1|AA|C|3517

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L6

Chain AK

60S ribosomal protein L13

Chain Af

Ubiquitin-60S ribosomal protein L40