IL_9BUP_126

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_126 not in the Motif Atlas

Geometric match to IL_6E7L_001

Geometric discrepancy: 0.0884

The information below is about IL_6E7L_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

9BUP|1|AA|C|3714
9BUP|1|AA|U|3715
9BUP|1|AA|C|3716
*
9BUP|1|AA|G|3775
9BUP|1|AA|U|3776
9BUP|1|AA|G|3777

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein L31

Chain AE

60S ribosomal protein L3