IL_9BUP_127

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

9BUP|1|AA|A|3774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_127 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.284

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9BUP|1|AA|C|3716
9BUP|1|AA|A|3717
*
9BUP|1|AA|U|3773
9BUP|1|AA|A|3774
9BUP|1|AA|G|3775

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein L31

Chain AE

60S ribosomal protein L3