IL_9BUP_128

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG*CUUAUC

Length

9 nucleotides

Bulged bases

9BUP|1|AA|U|3769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_128 not in the Motif Atlas

Homologous match to IL_8CRE_138

Geometric discrepancy: 0.1654

The information below is about IL_8CRE_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43622.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9BUP|1|AA|G|3720
9BUP|1|AA|U|3721
9BUP|1|AA|G|3722
*
9BUP|1|AA|C|3765
9BUP|1|AA|U|3766
9BUP|1|AA|U|3767
9BUP|1|AA|A|3768
9BUP|1|AA|U|3769
9BUP|1|AA|C|3770

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein L24

Chain A7

60S ribosomal protein L31

Chain AE

60S ribosomal protein L3