IL_9BUP_133
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGCCACA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_133 not in the Motif Atlas
- Geometric match to IL_9E6Q_106
- Geometric discrepancy: 0.2958
- The information below is about IL_9E6Q_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41504.1
- Basepair signature
- cWW-tSH-L-R-L-tHH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|AB|G|21
9BUP|1|AB|G|22
9BUP|1|AB|C|23
9BUP|1|AB|C|24
9BUP|1|AB|A|25
9BUP|1|AB|C|26
9BUP|1|AB|A|27
*
9BUP|1|AB|U|52
9BUP|1|AB|U|53
9BUP|1|AB|A|54
9BUP|1|AB|A|55
9BUP|1|AB|G|56
9BUP|1|AB|C|57
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain AG
- 60S ribosomal protein L11a
- Chain AR
- 60S ribosomal protein L5
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