IL_9BUP_134

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_134 not in the Motif Atlas

Homologous match to IL_9DFE_112

Geometric discrepancy: 0.1169

The information below is about IL_9DFE_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

9BUP|1|AB|C|28
9BUP|1|AB|C|29
*
9BUP|1|AB|G|48
9BUP|1|AB|A|49
9BUP|1|AB|A|50
9BUP|1|AB|G|51

Current chains

Chain AB

5S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L11a

Chain AR

60S ribosomal protein L5