IL_9BUP_136
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCUAGUAC*GGAACAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_136 not in the Motif Atlas
- Homologous match to IL_8OI5_139
- Geometric discrepancy: 0.2221
- The information below is about IL_8OI5_139
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9BUP|1|AB|G|71
9BUP|1|AB|C|72
9BUP|1|AB|U|73
9BUP|1|AB|A|74
9BUP|1|AB|G|75
9BUP|1|AB|U|76
9BUP|1|AB|A|77
9BUP|1|AB|C|78
*
9BUP|1|AB|G|98
9BUP|1|AB|G|99
9BUP|1|AB|A|100
9BUP|1|AB|A|101
9BUP|1|AB|C|102
9BUP|1|AB|A|103
9BUP|1|AB|C|104
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein L7
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 60S ribosomal protein L10
- Chain AR
- 60S ribosomal protein L5
- Chain AU
- 60S ribosomal protein L18a
- Chain AV
- 60S ribosomal protein L21
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