IL_9BUP_142

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUCG*UCCUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_142 not in the Motif Atlas

Geometric match to IL_8CRE_009

Geometric discrepancy: 0.3821

The information below is about IL_8CRE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68909.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9BUP|1|S7|G|47
9BUP|1|S7|U|48
9BUP|1|S7|C|49
9BUP|1|S7|G|50
*
9BUP|1|S7|U|60
9BUP|1|S7|C|61
9BUP|1|S7|C|62
9BUP|1|S7|U|63
9BUP|1|S7|C|64

Current chains

Chain S7

tRNA

Nearby chains

Chain Ai

Large ribosomal subunit protein eL42