IL_9BUP_144
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCAAA*UGACAA
- Length
- 11 nucleotides
- Bulged bases
- 9BUP|1|SA|A|474
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_144 not in the Motif Atlas
- Homologous match to IL_8CRE_392
- Geometric discrepancy: 0.1381
- The information below is about IL_8CRE_392
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12697.1
- Basepair signature
- cWW-cWW-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|SA|U|37
9BUP|1|SA|C|38
9BUP|1|SA|A|39
9BUP|1|SA|A|40
9BUP|1|SA|A|41
*
9BUP|1|SA|U|472
9BUP|1|SA|G|473
9BUP|1|SA|A|474
9BUP|1|SA|C|475
9BUP|1|SA|A|476
9BUP|1|SA|A|477
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S9
- Chain SF
- 40S ribosomal protein S4
Coloring options: