IL_9BUP_145
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 9BUP|1|SA|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_145 not in the Motif Atlas
- Geometric match to IL_8P9A_376
- Geometric discrepancy: 0.0752
- The information below is about IL_8P9A_376
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88082.2
- Basepair signature
- cWW-L-tSS-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9BUP|1|SA|G|42
9BUP|1|SA|A|43
9BUP|1|SA|U|44
9BUP|1|SA|U|45
9BUP|1|SA|A|46
9BUP|1|SA|A|47
9BUP|1|SA|G|48
*
9BUP|1|SA|C|437
9BUP|1|SA|G|438
9BUP|1|SA|C|439
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S9
- Chain SQ
- 40S ribosomal protein S23
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