IL_9BUP_147

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAAG*CUG

Length

9 nucleotides

Bulged bases

9BUP|1|SA|A|60

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|SA|U|58
9BUP|1|SA|G|59
9BUP|1|SA|A|60
9BUP|1|SA|A|61
9BUP|1|SA|A|62
9BUP|1|SA|G|63
*
9BUP|1|SA|C|89
9BUP|1|SA|U|90
9BUP|1|SA|G|91

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain S1

40S ribosomal protein S24

Chain SF

40S ribosomal protein S4

Chain SH

40S ribosomal protein S6