IL_9BUP_148
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAUAU*AGAAA
- Length
- 10 nucleotides
- Bulged bases
- 9BUP|1|SA|U|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_148 not in the Motif Atlas
- Homologous match to IL_8P9A_379
- Geometric discrepancy: 0.2413
- The information below is about IL_8P9A_379
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21667.2
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BUP|1|SA|U|64
9BUP|1|SA|A|65
9BUP|1|SA|U|66
9BUP|1|SA|A|67
9BUP|1|SA|U|68
*
9BUP|1|SA|A|84
9BUP|1|SA|G|85
9BUP|1|SA|A|86
9BUP|1|SA|A|87
9BUP|1|SA|A|88
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S1
- 40S ribosomal protein S24
- Chain SH
- 40S ribosomal protein S6
Coloring options: