IL_9BUP_153

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAC*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_153 not in the Motif Atlas

Homologous match to IL_8P9A_384

Geometric discrepancy: 0.3249

The information below is about IL_8P9A_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

9BUP|1|SA|U|148
9BUP|1|SA|A|149
9BUP|1|SA|C|150
*
9BUP|1|SA|G|160
9BUP|1|SA|U|161
9BUP|1|SA|A|162

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain S1

40S ribosomal protein S24

Chain SH

40S ribosomal protein S6