3D structure

PDB id
9BUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GGG*CGAUUC
Length
9 nucleotides
Bulged bases
9BUP|1|SA|U|386
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9BUP_157 not in the Motif Atlas
Homologous match to IL_8P9A_393
Geometric discrepancy: 0.1516
The information below is about IL_8P9A_393
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_93336.1
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
4

Unit IDs

9BUP|1|SA|G|369
9BUP|1|SA|G|370
9BUP|1|SA|G|371
*
9BUP|1|SA|C|382
9BUP|1|SA|G|383
9BUP|1|SA|A|384
9BUP|1|SA|U|385
9BUP|1|SA|U|386
9BUP|1|SA|C|387

Current chains

Chain SA
18S ribosomal RNA

Nearby chains

Chain SE
40S ribosomal protein S9
Chain SF
40S ribosomal protein S4
Chain SQ
40S ribosomal protein S23

Coloring options:


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