IL_9BUP_157
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGG*CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 9BUP|1|SA|U|386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_157 not in the Motif Atlas
- Homologous match to IL_8P9A_393
- Geometric discrepancy: 0.1516
- The information below is about IL_8P9A_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93336.1
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9BUP|1|SA|G|369
9BUP|1|SA|G|370
9BUP|1|SA|G|371
*
9BUP|1|SA|C|382
9BUP|1|SA|G|383
9BUP|1|SA|A|384
9BUP|1|SA|U|385
9BUP|1|SA|U|386
9BUP|1|SA|C|387
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S9
- Chain SF
- 40S ribosomal protein S4
- Chain SQ
- 40S ribosomal protein S23
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