IL_9BUP_159

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_159 not in the Motif Atlas

Homologous match to IL_8CRE_412

Geometric discrepancy: 0.0796

The information below is about IL_8CRE_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

9BUP|1|SA|C|417
9BUP|1|SA|A|418
9BUP|1|SA|U|419
*
9BUP|1|SA|A|426
9BUP|1|SA|A|427
9BUP|1|SA|G|428

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein L23

Chain SH

40S ribosomal protein S6