IL_9BUP_161

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_161 not in the Motif Atlas

Homologous match to IL_8P9A_397

Geometric discrepancy: 0.0789

The information below is about IL_8P9A_397

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

9BUP|1|SA|C|449
9BUP|1|SA|C|450
9BUP|1|SA|A|451
9BUP|1|SA|A|452
9BUP|1|SA|U|453
*
9BUP|1|SA|A|466
9BUP|1|SA|G|467

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain S1

40S ribosomal protein S24

Chain SE

40S ribosomal protein S9

Chain SF

40S ribosomal protein S4