IL_9BUP_165

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9BUP|1|SA|U|565

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_165 not in the Motif Atlas

Homologous match to IL_8CRE_422

Geometric discrepancy: 0.2331

The information below is about IL_8CRE_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9BUP|1|SA|G|564
9BUP|1|SA|U|565
9BUP|1|SA|C|566
*
9BUP|1|SA|G|593
9BUP|1|SA|C|594

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S30

Chain SD

40S ribosomal protein S3

Chain SE

40S ribosomal protein S9

Chain SQ

40S ribosomal protein S23