IL_9BUP_167

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

9BUP|1|SA|A|626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_167 not in the Motif Atlas

Homologous match to IL_8CRE_424

Geometric discrepancy: 0.0716

The information below is about IL_8CRE_424

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9BUP|1|SA|G|623
9BUP|1|SA|U|624
9BUP|1|SA|U|625
9BUP|1|SA|A|626
9BUP|1|SA|A|627
9BUP|1|SA|A|628
9BUP|1|SA|A|629
*
9BUP|1|SA|U|1205
9BUP|1|SA|C|1206

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain Ag

60S ribosomal protein L41

Chain S3

40S ribosomal protein S26

Chain SQ

40S ribosomal protein S23