IL_9BUP_181
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGGG*UAA
- Length
- 7 nucleotides
- Bulged bases
- 9BUP|1|SA|G|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_181 not in the Motif Atlas
- Geometric match to IL_5T3K_001
- Geometric discrepancy: 0.1756
- The information below is about IL_5T3K_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
9BUP|1|SA|U|943
9BUP|1|SA|G|944
9BUP|1|SA|G|945
9BUP|1|SA|G|946
*
9BUP|1|SA|U|1020
9BUP|1|SA|A|1021
9BUP|1|SA|A|1022
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain A6
- 60S ribosomal protein L30e
- Chain S3
- 40S ribosomal protein S26
- Chain SB
- 40S ribosomal protein S3a
- Chain SU
- 40S ribosomal protein S15
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