IL_9BUP_186
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 9BUP|1|SA|C|1197, 9BUP|1|SA|U|1199, 9BUP|1|SA|G|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_186 not in the Motif Atlas
- Homologous match to IL_8P9A_425
- Geometric discrepancy: 0.1226
- The information below is about IL_8P9A_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BUP|1|SA|C|1103
9BUP|1|SA|G|1104
9BUP|1|SA|A|1105
*
9BUP|1|SA|U|1196
9BUP|1|SA|C|1197
9BUP|1|SA|U|1198
9BUP|1|SA|U|1199
9BUP|1|SA|U|1200
9BUP|1|SA|G|1201
9BUP|1|SA|G|1202
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SG
- 40S ribosomal protein S5
- Chain SK
- 40S ribosomal protein S15A
- Chain SQ
- 40S ribosomal protein S23
- Chain SU
- 40S ribosomal protein S15
- Chain SV
- 40S ribosomal protein S11
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