IL_9BUP_187

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_187 not in the Motif Atlas

Geometric match to IL_3TD0_001

Geometric discrepancy: 0.0905

The information below is about IL_3TD0_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

9BUP|1|SA|A|1117
9BUP|1|SA|U|1118
9BUP|1|SA|G|1119
*
9BUP|1|SA|C|1169
9BUP|1|SA|C|1170
9BUP|1|SA|U|1171

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S27

Chain SB

40S ribosomal protein S3a

Chain SC

40S ribosomal protein SA